BWASP

Bisulfite-seq data Workflow Automation Software and Protocols

The BWASP repository encompasses code we developed in the Brendel Group for scalable, reproducible analyses of bisulfite sequencing data.

Getting Started

The BWASP package conforms to our RAMOSE philosophy and promise: it should generate reproducible, accurate, and meaningful results; it is open (source) and designed to be scalable and easy to use.

To proceed, please follow the instructions in the INSTALL document. Once all preparatory steps are taken care of, see the HOWTO document

Reference

Amy L. Toth, Saranya Sankaranarayanan, and Volker P. Brendel (2016) Estimating the size and dynamics of the CpG methylome of social insects. To be submitted.

Contact

Please direct all comments and suggestions to Volker Brendel at Indiana University.